miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|19152044|gb|BM816030.1|BM816030 CCCGGGCTGCAGGAATTCGGCACGAGGGTTGGCCCTGAACTTTGTAAGTCATCCTAATGGATATTAGTTAGTACTCCCTC
TGTAAAGAAATAAAAGAGCGTTTAGATCACTAAAAAGTAGTTATCTAAATAATCTTATATTTGTTTATGGAGGGAGTATC
TAGTTATATGAGAGTATTGTTCAGCTATACTCATTAGCTGCAATGGATCTTGTTAATGTAGCTTGCAGATGTGTGGTCTT
GTGGGGTGACTCTTTACGTCATGCTTGTGGGAGGCTACCCATTTGAAGACCAGGATGACCCCAAGAATATACGCAAGACC
ATTCAGCGAATAATGTCTGTGCAATACACTATACCTGATCATGTCCACATATCCACGGAATGCAGACAGCTTATGGCCAG
TATCTTTGTTAACGTCCCATCGAAGAGAATCACGATGAGGGAAATAAAGAGCCACCCGTGGTTCTTGAAGAACCTGCCAA
GGGAGCTCACTGAGACGGCGCAGGGCATGTACTACAGGAGGGATAACGCCGTGCCTTCTTTCTCGGAGCAGACCTCAGAG
GAAATCATGAAGATTGTCCAGGAGGCAAGGACCATGCCGAAGTCATCCAGGCCAAGCTATGGTTGGGGCGACGACGGTTC
AGATGACGAGGAAGAGAAGGAAGGGAAGACCGACCANAAAANAGGGANGANGANGANGACNANNTACGACAGAGGGTCAA
AGAGGTCCATGCAAGCGGAGAGCCTCGCATGAGCTCGCTACGCATATCATGAAAGTATGCGGAGTTAGTTACCTGTAGAT
AATCGGGCTATCGTGGGAACTGTGCGCTCAANTGGGTAAATGCATTTTTGCTGAAGTTTGCTTCTCCTTGGNTTTGGGTC
CCTGTACCCGTATTACATGGGACAAAG




Most similar to sp|Q5N942|SAPK4_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5N942|SAPK4_ORYSJ Serine/threonine-protein kinase SAPK4
           OS=Oryza sativa subsp. japonica GN=SAPK4 PE=2 SV=2
          Length = 360

 Score =  243 bits (620), Expect(2) = 1e-67
 Identities = 117/133 (87%), Positives = 124/133 (93%)
 Frame = +3

Query: 222 LADVWSCGVTLYVMLVGGYPFEDQDDPKNIRKTIQRIMSVQYTIPDHVHISTECRQLMAS 401
           LADVWSCGVTLYVMLVG YPFEDQDDPKNIRKTIQRIMSVQY IPD+VHIS EC+QL+A 
Sbjct: 180 LADVWSCGVTLYVMLVGAYPFEDQDDPKNIRKTIQRIMSVQYKIPDYVHISAECKQLIAR 239

Query: 402 IFVNVPSKRITMREIKSHPWFLKNLPRELTETAQGMYYRRDNAVPSFSEQTSEEIMKIVQ 581
           IFVN P +RITM+EIKSHPWFLKNLPRELTETAQ MYYRRDN+VPSFS+QTSEEIMKIVQ
Sbjct: 240 IFVNNPLRRITMKEIKSHPWFLKNLPRELTETAQAMYYRRDNSVPSFSDQTSEEIMKIVQ 299

Query: 582 EARTMPKSSRPSY 620
           EARTMPKSSR  Y
Sbjct: 300 EARTMPKSSRTGY 312



 Score = 35.8 bits (81), Expect(2) = 1e-67
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +2

Query: 698 DXXRQRVKEVHASGEPRMSSLRI 766
           D   +RVKEVHASGE RMSSLRI
Sbjct: 338 DEYDKRVKEVHASGELRMSSLRI 360


>sp|Q7XQP4|SAPK7_ORYSJ Serine/threonine-protein kinase SAPK7
           OS=Oryza sativa subsp. japonica GN=SAPK7 PE=2 SV=2
          Length = 359

 Score =  210 bits (535), Expect(2) = 3e-54
 Identities = 97/136 (71%), Positives = 117/136 (86%), Gaps = 2/136 (1%)
 Frame = +3

Query: 225 ADVWSCGVTLYVMLVGGYPFEDQDDPKNIRKTIQRIMSVQYTIPDHVHISTECRQLMASI 404
           ADVWSCGVTLYVMLVG YPFED DDPKN RKTI RIMS+QY IP++VH+S +CRQL++ I
Sbjct: 181 ADVWSCGVTLYVMLVGAYPFEDPDDPKNFRKTIGRIMSIQYKIPEYVHVSQDCRQLLSRI 240

Query: 405 FVNVPSKRITMREIKSHPWFLKNLPRELTETAQGMYYRRDNAVPSFSEQTSEEIMKIVQE 584
           FV  P+KRIT+REI++HPWFLKNLPRELTE AQ MYY++DN+ P++S Q+ EEIMKIV+E
Sbjct: 241 FVANPAKRITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMKIVEE 300

Query: 585 ARTMPKSSRP--SYGW 626
           ART P+SS P   +GW
Sbjct: 301 ARTPPRSSTPVAGFGW 316



 Score = 23.5 bits (49), Expect(2) = 3e-54
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 698 DXXRQRVKEVHASGEPRMS 754
           D   ++VK+VHASGE ++S
Sbjct: 341 DEYDKQVKQVHASGEFQLS 359


>sp|Q6ZI44|SAPK6_ORYSJ Serine/threonine-protein kinase SAPK6
           OS=Oryza sativa subsp. japonica GN=SAPK6 PE=2 SV=1
          Length = 365

 Score =  205 bits (522), Expect = 3e-52
 Identities = 95/137 (69%), Positives = 116/137 (84%), Gaps = 2/137 (1%)
 Frame = +3

Query: 222 LADVWSCGVTLYVMLVGGYPFEDQDDPKNIRKTIQRIMSVQYTIPDHVHISTECRQLMAS 401
           +ADVWSCGVTLYVMLVG YPFED DDPKN RKTI RI+S+QY IP++VHIS +CRQL++ 
Sbjct: 180 MADVWSCGVTLYVMLVGAYPFEDPDDPKNFRKTIGRIVSIQYKIPEYVHISQDCRQLLSR 239

Query: 402 IFVNVPSKRITMREIKSHPWFLKNLPRELTETAQGMYYRRDNAVPSFSEQTSEEIMKIVQ 581
           IFV  P+KRIT+REI++HPWF+KNLPRELTE AQ  YY++DN+  +FS+QT +EIMKIVQ
Sbjct: 240 IFVANPAKRITIREIRNHPWFMKNLPRELTEAAQAKYYKKDNSARTFSDQTVDEIMKIVQ 299

Query: 582 EARTMPKSSRP--SYGW 626
           EA+T P SS P   +GW
Sbjct: 300 EAKTPPPSSTPVAGFGW 316